Publication: Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source Turkish DeLight
| dc.contributor.author | Atalay, Necati | |
| dc.contributor.author | Akcan, Enver Kamil | |
| dc.contributor.author | Gul, Mehmet | |
| dc.contributor.author | Ayan, Esra | |
| dc.contributor.author | Destan, Ebru | |
| dc.contributor.author | Ertem, Fatma Betul | |
| dc.contributor.author | Tokay, Nurettin | |
| dc.contributor.author | Çakilkaya, Barış | |
| dc.contributor.author | Nergiz, Zeliş | |
| dc.contributor.author | Karakadıoglu, Gözde | |
| dc.contributor.institution | Atalay, Necati, Department of Molecular Biology and Genetics, Koç Üniversitesi, Istanbul, Turkey, Department of Molecular Biology and Genetics, Gebze Teknik Üniversitesi, Gebze, Turkey, Experimental Medicine Research and Application Center, University of Health Sciences, Istanbul, Turkey | |
| dc.contributor.institution | Akcan, Enver Kamil, Department of Molecular Biology and Genetics, Koç Üniversitesi, Istanbul, Turkey, Department of Molecular Biology and Genetics, İstanbul Teknik Üniversitesi, Istanbul, Turkey | |
| dc.contributor.institution | Gul, Mehmet, Department of Molecular Biology and Genetics, Koç Üniversitesi, Istanbul, Turkey | |
| dc.contributor.institution | Ayan, Esra, Department of Molecular Biology and Genetics, Koç Üniversitesi, Istanbul, Turkey | |
| dc.contributor.institution | Destan, Ebru, Department of Molecular Biology and Genetics, Koç Üniversitesi, Istanbul, Turkey | |
| dc.contributor.institution | Ertem, Fatma Betul, Department of Molecular Biology and Genetics, Koç Üniversitesi, Istanbul, Turkey | |
| dc.contributor.institution | Tokay, Nurettin, Department of Molecular Biology and Genetics, Koç Üniversitesi, Istanbul, Turkey | |
| dc.contributor.institution | Çakilkaya, Barış, Department of Molecular Biology and Genetics, Koç Üniversitesi, Istanbul, Turkey | |
| dc.contributor.institution | Nergiz, Zeliş, Department of Molecular Biology and Genetics, Koç Üniversitesi, Istanbul, Turkey, Koç Üniversitesi, Istanbul, Turkey | |
| dc.contributor.institution | Karakadıoglu, Gözde, Department of Molecular Biology and Genetics, Koç Üniversitesi, Istanbul, Turkey | |
| dc.date.accessioned | 2025-10-05T15:09:46Z | |
| dc.date.issued | 2023 | |
| dc.description.abstract | X-ray crystallography is a robust and powerful structural biology technique that provides high-resolution atomic structures of biomacromolecules. Scientists use this technique to unravel mechanistic and structural details of biological macromolecules (e.g., proteins, nucleic acids, protein complexes, protein-nucleic acid complexes, or large biological compartments). Since its inception, single-crystal cryocrystallography has never been performed in Türkiye due to the lack of a single-crystal X-ray diffractometer. The X-ray diffraction facility recently established at the University of Health Sciences, İstanbul, Türkiye will enable Turkish and international researchers to easily perform high-resolution structural analysis of biomacromolecules from single crystals. Here, we describe the technical and practical outlook of a state-of-the-art home-source X-ray, using lysozyme as a model protein. The methods and practice described in this article can be applied to any biological sample for structural studies. Therefore, this article will be a valuable practical guide from sample preparation to data analysis. © 2023 Elsevier B.V., All rights reserved. | |
| dc.identifier.doi | 10.55730/1300-0152.2637 | |
| dc.identifier.issn | 13000152 | |
| dc.identifier.issue | 1 | |
| dc.identifier.scopus | 2-s2.0-85149045424 | |
| dc.identifier.uri | https://doi.org/10.55730/1300-0152.2637 | |
| dc.identifier.uri | https://hdl.handle.net/20.500.14719/8346 | |
| dc.identifier.volume | 47 | |
| dc.language.iso | en | |
| dc.publisher | TUBITAK | |
| dc.relation.oastatus | All Open Access | |
| dc.relation.oastatus | Gold Open Access | |
| dc.relation.oastatus | Green Accepted Open Access | |
| dc.relation.oastatus | Green Open Access | |
| dc.relation.source | Turkish Journal of Biology | |
| dc.subject.authorkeywords | Atomic Resolution | |
| dc.subject.authorkeywords | Drug Development | |
| dc.subject.authorkeywords | Drug Repurposing | |
| dc.subject.authorkeywords | Light Source | |
| dc.subject.authorkeywords | Structural Biology | |
| dc.subject.authorkeywords | Structural Dynamics | |
| dc.subject.authorkeywords | X-ray Crystallography | |
| dc.title | Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source Turkish DeLight | |
| dc.type | Article | |
| dcterms.references | Adams, Paul D., PHENIX: A comprehensive Python-based system for macromolecular structure solution, Acta Crystallographica Section D: Biological Crystallography, 66, 2, pp. 213-221, (2010), Brügemann, Lutz, Detectors for X-ray diffraction and scattering: A user's overview, Nuclear Instruments and Methods in Physics Research, Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, 531, 1-2, pp. 292-301, (2004), Chapman, H. N., Femtosecond X-ray protein nanocrystallography, Nature, 470, 7332, pp. 73-78, (2011), Chapman, H. N., X-ray free-electron lasers for the structure and dynamics of macromolecules, Annual Review of Biochemistry, 88, pp. 35-58, (2019), Weymouth, John W., Elements of X-Ray Diffraction, American Journal of Physics, 25, 6, pp. 394-395, (1957), Durdagi, Serdar, Near-physiological-temperature serial crystallography reveals conformations of SARS-CoV-2 main protease active site for improved drug repurposing, Structure, 29, 12, pp. 1382-1396.e6, (2021), Emsley, Paul, Coot: Model-building tools for molecular graphics, Acta Crystallographica Section D: Biological Crystallography, 60, 12 I, pp. 2126-2132, (2004), Ertem, Fatma Betul, Protocol for structure determination of SARS-CoV-2 main protease at near-physiological-temperature by serial femtosecond crystallography, STAR Protocols, 3, 1, (2022), Garman, Elspeth F., Cryocooling and radiation damage in macromolecular crystallography, Acta Crystallographica Section D: Biological Crystallography, 62, 1, pp. 32-47, (2006), Girard, Adrien, A new diffractometer for diffuse scattering studies on the ID28 beamline at the ESRF, Journal of Synchrotron Radiation, 26, 1, pp. 272-279, (2019) | |
| dspace.entity.type | Publication | |
| local.indexed.at | Scopus | |
| person.identifier.scopus-author-id | 57954068700 | |
| person.identifier.scopus-author-id | 57954068800 | |
| person.identifier.scopus-author-id | 57219160859 | |
| person.identifier.scopus-author-id | 57222395454 | |
| person.identifier.scopus-author-id | 57222396595 | |
| person.identifier.scopus-author-id | 57226579600 | |
| person.identifier.scopus-author-id | 57201031428 | |
| person.identifier.scopus-author-id | 57383680800 | |
| person.identifier.scopus-author-id | 57883943900 | |
| person.identifier.scopus-author-id | 57754985400 |
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